TF_ChIP-seq_ENCSR101FJS
TF_ChIP-seq ENCSR101FJS [biosample_summary="Homo sapiens HepG2" and target="TBL1XR1"]
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| Id: | TF_ChIP-seq/ENCSR101FJS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR101FJS [biosamplesummary="Homo sapiens HepG2" and target="TBL1XR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF126KGW|/files/ENCFF126KGW/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN279QXC|/analyses/ENCAN279QXC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF230PAS|/files/ENCFF230PAS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19374675 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TBL1XR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF126KGW|/files/ENCFF126KGW/}, {ENCFF074ARU|/files/ENCFF074ARU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 2.24. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF650MMD|/files/ENCFF650MMD/}, {ENCFF386ZKE|/files/ENCFF386ZKE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 2.24. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR101FJS | float |
TF_ChIP-seq_ENCSR101FJS |
TF_ChIP-seq ENCSR101FJS [biosample_summary="Homo sapiens HepG2" and target="TBL1XR1"]
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[5.68, 300] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF126KGW.bed.gz | 179.36 KB | 1bed94e040d87d99107b00b7a08dd369 |
| ENCFF126KGW.bed.gz.dvc | 100.0 B | d0895ab54f13815961b0b054505974f2 |
| ENCFF126KGW.tabix.bed.gz | 135.61 KB | 593f24d0fe2dc39c125eefdf03b23eb0 |
| ENCFF126KGW.tabix.bed.gz.dvc | 106.0 B | 06b500fb219466e6215acfd93e21b3ce |
| ENCFF126KGW.tabix.bed.gz.tbi | 79.69 KB | 29a90d813fcdf6bf14b2e782f2c6b7ab |
| ENCFF126KGW.tabix.bed.gz.tbi.dvc | 109.0 B | 85ad8b51b6aa52f4a48db217b6e0ac93 |
| genomic_resource.yaml | 3.71 KB | 86c72122b47d1266acbda5f84c6159dc |
| genomic_resource_original.yaml | 3.61 KB | 8b5aee5a9eecbb27472641add4c1c6cf |
| statistics/ |