TF_ChIP-seq_ENCSR101FJM
TF_ChIP-seq ENCSR101FJM [biosample_summary="Homo sapiens HCT116" and target="ZNF274"]
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| Id: | TF_ChIP-seq/ENCSR101FJM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR101FJM [biosamplesummary="Homo sapiens HCT116" and target="ZNF274"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN885IAX|/analyses/ENCAN885IAX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN885IAX|/analyses/ENCAN885IAX/} has in progress subobject document {e2ed52cc-bf5e-43e6-a3c3-ffd97156998a|/documents/e2ed52cc-bf5e-43e6-a3c3-ffd97156998a/} audit_warning: Processed alignments file {ENCFF089YCK|/files/ENCFF089YCK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16960229 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF274-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF089YCK|/files/ENCFF089YCK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF089YCK|/files/ENCFF089YCK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR101FJM | float |
TF_ChIP-seq_ENCSR101FJM |
TF_ChIP-seq ENCSR101FJM [biosample_summary="Homo sapiens HCT116" and target="ZNF274"]
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[11.6, 593] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF274VMH.bed.gz | 18.99 KB | 559edfe62958869744849ef2c838011e |
| ENCFF274VMH.bed.gz.dvc | 99.0 B | 15ca0a3294e821779e609b1ae3a94b9a |
| ENCFF274VMH.tabix.bed.gz | 13.25 KB | 681cd03149201e37efb80a0f65601772 |
| ENCFF274VMH.tabix.bed.gz.dvc | 105.0 B | 18d2386cb575e2f8b6aa1e3935c7bfa0 |
| ENCFF274VMH.tabix.bed.gz.tbi | 10.36 KB | f1a6622c36bbf64f43be32254dce287f |
| ENCFF274VMH.tabix.bed.gz.tbi.dvc | 109.0 B | 918dbc42165d6e8222e2812e8a719546 |
| genomic_resource.yaml | 3.38 KB | 49c47ca716cf27fffb02ac6db48e23a0 |
| genomic_resource_original.yaml | 3.29 KB | fa766092df3db825c6421aa1a0cf1a5b |
| statistics/ |