TF_ChIP-seq_ENCSR100UQX
TF_ChIP-seq ENCSR100UQX [biosample_summary="Homo sapiens K562" and target="TAF9B"]
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| Id: | TF_ChIP-seq/ENCSR100UQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR100UQX [biosamplesummary="Homo sapiens K562" and target="TAF9B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN377IEA|/analyses/ENCAN377IEA/} has in progress subobject document {c8c97d0b-3a8f-4885-abc0-8b1d2ec3a894|/documents/c8c97d0b-3a8f-4885-abc0-8b1d2ec3a894/} audit_internal_action: Released analysis {ENCAN377IEA|/analyses/ENCAN377IEA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF370URC|/files/ENCFF370URC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF370URC|/files/ENCFF370URC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR100UQX | float |
TF_ChIP-seq_ENCSR100UQX |
TF_ChIP-seq ENCSR100UQX [biosample_summary="Homo sapiens K562" and target="TAF9B"]
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[16.8, 2.76e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF432HRL.bed.gz | 269.08 KB | 74dc9d01483e650ec5927fb73482d1a4 |
| ENCFF432HRL.bed.gz.dvc | 100.0 B | a9cb6defa267e738fb727f74a4897f31 |
| ENCFF432HRL.tabix.bed.gz | 204.29 KB | d50f27cd6413c9651ab6239fab6cf332 |
| ENCFF432HRL.tabix.bed.gz.dvc | 106.0 B | 62a2386c650997df84cd6bc6cd70a170 |
| ENCFF432HRL.tabix.bed.gz.tbi | 94.06 KB | 235e257ae40d8a8d78ca23ddfe2310c4 |
| ENCFF432HRL.tabix.bed.gz.tbi.dvc | 109.0 B | 891ab187ada0c98d306f106604e83dda |
| genomic_resource.yaml | 3.42 KB | 795d30771feedd23d41c3025a3b219c8 |
| genomic_resource_original.yaml | 3.32 KB | 0a0e24451a9ed5141053c2c6844efffb |
| statistics/ |