TF_ChIP-seq_ENCSR099MNR
TF_ChIP-seq ENCSR099MNR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A" and target="ZNF75A"]
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| Id: | TF_ChIP-seq/ENCSR099MNR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR099MNR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A" and target="ZNF75A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN762YXC|/analyses/ENCAN762YXC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN762YXC|/analyses/ENCAN762YXC/} has in progress subobject document {b0c0b738-2c8f-417c-b314-82c267352814|/documents/b0c0b738-2c8f-417c-b314-82c267352814/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF931ERQ|/files/ENCFF931ERQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF931ERQ|/files/ENCFF931ERQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.58. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955ANW|/files/ENCFF955ANW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955ANW|/files/ENCFF955ANW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.09. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR099MNR | float |
TF_ChIP-seq_ENCSR099MNR |
TF_ChIP-seq ENCSR099MNR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A" and target="ZNF75A"]
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[15.5, 3.85e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF307UZC.bed.gz | 72.38 KB | aa09a723f3ab1f0ea199a6174d3dcd69 |
| ENCFF307UZC.bed.gz.dvc | 99.0 B | 4709f304bd684f0a8871ebe139428b5b |
| ENCFF307UZC.tabix.bed.gz | 49.3 KB | 8960587ee4b1a6c1f494af3b11f12dba |
| ENCFF307UZC.tabix.bed.gz.dvc | 105.0 B | 6207a87bb8d730d2aaeeb23c9b90cb44 |
| ENCFF307UZC.tabix.bed.gz.tbi | 35.57 KB | 7fc11ae087f576bc5829439818ba3c25 |
| ENCFF307UZC.tabix.bed.gz.tbi.dvc | 109.0 B | 8f2846bd894d56a5d71d41ddf5123387 |
| genomic_resource.yaml | 4.45 KB | 936d7674d0bb973b96e86d99df607575 |
| genomic_resource_original.yaml | 4.28 KB | 3d532484ec0d35c24046c7bfd520bd61 |
| statistics/ |