TF_ChIP-seq_ENCSR096OUP
TF_ChIP-seq ENCSR096OUP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4" and target="NFATC4"]
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| Id: | TF_ChIP-seq/ENCSR096OUP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR096OUP [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4" and target="NFATC4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN170CIS|/analyses/ENCAN170CIS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF183SCQ|/files/ENCFF183SCQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF183SCQ|/files/ENCFF183SCQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF290MVS|/files/ENCFF290MVS/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF290MVS|/files/ENCFF290MVS/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR096OUP | float |
TF_ChIP-seq_ENCSR096OUP |
TF_ChIP-seq ENCSR096OUP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4" and target="NFATC4"]
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[14.2, 1.97e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF230EPT.bed.gz | 56.85 KB | 8c7e08d47195a86b9b4f20da178be1ff |
| ENCFF230EPT.bed.gz.dvc | 99.0 B | b5fcbb7454d2712a276e4af38133fb83 |
| ENCFF230EPT.tabix.bed.gz | 36.47 KB | 6e22fe5944c2df363ac13f9f014792ae |
| ENCFF230EPT.tabix.bed.gz.dvc | 105.0 B | fc8a63fdb825a599fb77d3ee54611fdd |
| ENCFF230EPT.tabix.bed.gz.tbi | 23.24 KB | 382c3c6056181115f9d8f12ced63986d |
| ENCFF230EPT.tabix.bed.gz.tbi.dvc | 109.0 B | 0394f5a3cd594ab7fb530f05fdea30d8 |
| genomic_resource.yaml | 4.24 KB | aeaf49c6173ee52e251bd70fa239b1f9 |
| genomic_resource_original.yaml | 4.07 KB | 144be00f27eb23d5757dc58fe087663a |
| statistics/ |