TF_ChIP-seq_ENCSR094WHO
TF_ChIP-seq ENCSR094WHO [biosample_summary="Homo sapiens HEK293T" and target="FOXA1"]
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| Id: | TF_ChIP-seq/ENCSR094WHO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR094WHO [biosamplesummary="Homo sapiens HEK293T" and target="FOXA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN459CMD|/analyses/ENCAN459CMD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN459CMD|/analyses/ENCAN459CMD/} has in progress subobject document {18277923-a6fe-4532-ba41-7ff388c26840|/documents/18277923-a6fe-4532-ba41-7ff388c26840/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF344PVS|/files/ENCFF344PVS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF344PVS|/files/ENCFF344PVS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.96. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF130LHI|/files/ENCFF130LHI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF130LHI|/files/ENCFF130LHI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.57. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR094WHO | float |
TF_ChIP-seq_ENCSR094WHO |
TF_ChIP-seq ENCSR094WHO [biosample_summary="Homo sapiens HEK293T" and target="FOXA1"]
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[11.7, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF942VEL.bed.gz | 18.41 KB | 70c3905563fbd42ddcb7e048e1550f46 |
| ENCFF942VEL.bed.gz.dvc | 99.0 B | 5d4d599f18bce43d72fc5ce9757125a3 |
| ENCFF942VEL.tabix.bed.gz | 12.08 KB | 155d8ef2df7e7aaf0d353cb85339fe8e |
| ENCFF942VEL.tabix.bed.gz.dvc | 105.0 B | fa8bffefaf39af2de24b0306b985d8d2 |
| ENCFF942VEL.tabix.bed.gz.tbi | 14.08 KB | 43ce9d135caa08d1360b14532cc77cfb |
| ENCFF942VEL.tabix.bed.gz.tbi.dvc | 109.0 B | 23b2b5121ff5efc8f7a07cb413a7a542 |
| genomic_resource.yaml | 4.19 KB | 6560151d50ed64ec7394746e1c81c282 |
| genomic_resource_original.yaml | 4.09 KB | dd732224c4392876f8c6e3eb808e80b4 |
| statistics/ |