TF_ChIP-seq_ENCSR091BOQ
TF_ChIP-seq ENCSR091BOQ [biosample_summary="Homo sapiens GM12878" and target="SUZ12"]
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| Id: | TF_ChIP-seq/ENCSR091BOQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR091BOQ [biosamplesummary="Homo sapiens GM12878" and target="SUZ12"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN121RJO|/analyses/ENCAN121RJO/} has in progress subobject document {54de95a4-bd8e-4455-bc22-3864185d1801|/documents/54de95a4-bd8e-4455-bc22-3864185d1801/} audit_internal_action: Released analysis {ENCAN121RJO|/analyses/ENCAN121RJO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF151PWJ|/files/ENCFF151PWJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF151PWJ|/files/ENCFF151PWJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.34. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR091BOQ | float |
TF_ChIP-seq_ENCSR091BOQ |
TF_ChIP-seq ENCSR091BOQ [biosample_summary="Homo sapiens GM12878" and target="SUZ12"]
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[4.28, 87.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF894BBO.bed.gz | 61.83 KB | 84cfedbe2656c3cb509d9473ee6577fe |
| ENCFF894BBO.bed.gz.dvc | 99.0 B | c5042bb344c947f67872cf7901f762df |
| ENCFF894BBO.tabix.bed.gz | 51.04 KB | 82e4158c4529ec83d2757995746371ba |
| ENCFF894BBO.tabix.bed.gz.dvc | 105.0 B | 7184e336e34a138fd4ed10be9570903d |
| ENCFF894BBO.tabix.bed.gz.tbi | 26.71 KB | aff85a01a87a4dac51ce55d2a2d113f2 |
| ENCFF894BBO.tabix.bed.gz.tbi.dvc | 109.0 B | 321593f92fa10b13bf6b8e2b7c40f888 |
| genomic_resource.yaml | 2.88 KB | 651e97cd2b00556d760b4a9f25eaedb8 |
| genomic_resource_original.yaml | 2.78 KB | ac64f5cc5c7adddfaa2004e27646d32f |
| statistics/ |