TF_ChIP-seq_ENCSR090ZDO
TF_ChIP-seq ENCSR090ZDO [biosample_summary="Homo sapiens HEK293T" and target="SUZ12"]
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| Id: | TF_ChIP-seq/ENCSR090ZDO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR090ZDO [biosamplesummary="Homo sapiens HEK293T" and target="SUZ12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN077OFL|/analyses/ENCAN077OFL/} has in progress subobject document {b806f8bf-a1f5-4d4d-855d-445a6fd7a9df|/documents/b806f8bf-a1f5-4d4d-855d-445a6fd7a9df/} audit_internal_action: Released analysis {ENCAN077OFL|/analyses/ENCAN077OFL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF338LEN|/files/ENCFF338LEN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF338LEN|/files/ENCFF338LEN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR090ZDO | float |
TF_ChIP-seq_ENCSR090ZDO |
TF_ChIP-seq ENCSR090ZDO [biosample_summary="Homo sapiens HEK293T" and target="SUZ12"]
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[17.6, 4.61e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF811QXE.bed.gz | 13.62 KB | 0216bab5b423f250e3a71ee3f4b62d90 |
| ENCFF811QXE.bed.gz.dvc | 99.0 B | 6333c2ea68ac9027868f54072e5cbd86 |
| ENCFF811QXE.tabix.bed.gz | 9.23 KB | 165da37bb8a41b18b0a28ee5d18c2829 |
| ENCFF811QXE.tabix.bed.gz.dvc | 104.0 B | 40051677c5fd761e92046cd367c06c80 |
| ENCFF811QXE.tabix.bed.gz.tbi | 10.38 KB | 124aba201c72dceaa3d136fd3c9f532a |
| ENCFF811QXE.tabix.bed.gz.tbi.dvc | 109.0 B | 380989b83ac61169e1343e7cec8bc56d |
| genomic_resource.yaml | 2.88 KB | 92868467ee80748d7c07803b0dac4516 |
| genomic_resource_original.yaml | 2.78 KB | 67835217166580ced30fb8890f2f4bea |
| statistics/ |