TF_ChIP-seq_ENCSR089NBS
TF_ChIP-seq ENCSR089NBS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR089NBS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR089NBS [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN630BXD|/analyses/ENCAN630BXD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF834STJ|/files/ENCFF834STJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF834STJ|/files/ENCFF834STJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR089NBS | float |
TF_ChIP-seq_ENCSR089NBS |
TF_ChIP-seq ENCSR089NBS [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="CTCF"]
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[7.12, 434] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF204QCJ.bed.gz | 831.74 KB | 65712c75abec524cf250ea34b8d4cc92 |
| ENCFF204QCJ.bed.gz.dvc | 100.0 B | c1c34e1a91663a0cd57f54bc871ac9f9 |
| ENCFF204QCJ.tabix.bed.gz | 569.52 KB | 75cbf1fe49cbadfa7efb6059e7849630 |
| ENCFF204QCJ.tabix.bed.gz.dvc | 106.0 B | 93b48b4d900c7b8ef8c39ed06171073b |
| ENCFF204QCJ.tabix.bed.gz.tbi | 259.85 KB | dac83d0ea0ca6c00b9b57548a51248b3 |
| ENCFF204QCJ.tabix.bed.gz.tbi.dvc | 110.0 B | 7423f1c91bba6fc8e1fe2dbbbb640c81 |
| genomic_resource.yaml | 2.76 KB | ddae74e5663d34e4e2799af972cf4482 |
| genomic_resource_original.yaml | 2.63 KB | 56d66e1c99058571a97df2b48669f281 |
| statistics/ |