TF_ChIP-seq_ENCSR087HFN
TF_ChIP-seq ENCSR087HFN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230" and target="ZNF230"]
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| Id: | TF_ChIP-seq/ENCSR087HFN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR087HFN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230" and target="ZNF230"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN550HIU|/analyses/ENCAN550HIU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN550HIU|/analyses/ENCAN550HIU/} has in progress subobject document {9367782f-ba05-4cf5-8bf5-7d2e8e8f0b1b|/documents/9367782f-ba05-4cf5-8bf5-7d2e8e8f0b1b/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF055FLQ|/files/ENCFF055FLQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF055FLQ|/files/ENCFF055FLQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.30. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF222PUD|/files/ENCFF222PUD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF222PUD|/files/ENCFF222PUD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR087HFN | float |
TF_ChIP-seq_ENCSR087HFN |
TF_ChIP-seq ENCSR087HFN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230" and target="ZNF230"]
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[11.8, 557] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF854DNO.bed.gz | 278.31 KB | ca02fab61c6b40c8fe781e469eae584d |
| ENCFF854DNO.bed.gz.dvc | 100.0 B | 70d5fc2de73ad9c43ce123e39c032015 |
| ENCFF854DNO.tabix.bed.gz | 223.38 KB | 9f877c8d468439aa9a3629704326fddb |
| ENCFF854DNO.tabix.bed.gz.dvc | 106.0 B | 42914068387bc6c087e19db8a463b55e |
| ENCFF854DNO.tabix.bed.gz.tbi | 90.3 KB | a1b818503d8caa8c5d2fa9b2e0e80606 |
| ENCFF854DNO.tabix.bed.gz.tbi.dvc | 109.0 B | c74950834140196d3131c30504af7670 |
| genomic_resource.yaml | 4.45 KB | 2597d026a56bbcd4daa71f45a04d34a4 |
| genomic_resource_original.yaml | 4.29 KB | d68a7db39e98e1285e6a3195b3debfe4 |
| statistics/ |