TF_ChIP-seq_ENCSR086FZL
TF_ChIP-seq ENCSR086FZL [biosample_summary="Homo sapiens K562" and target="KAT8"]
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| Id: | TF_ChIP-seq/ENCSR086FZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR086FZL [biosamplesummary="Homo sapiens K562" and target="KAT8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN180LHP|/analyses/ENCAN180LHP/} has in progress subobject document {d5d84509-dc6e-4f17-9423-5131cc9d50d7|/documents/d5d84509-dc6e-4f17-9423-5131cc9d50d7/} audit_internal_action: Released analysis {ENCAN180LHP|/analyses/ENCAN180LHP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF734RIO|/files/ENCFF734RIO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18503262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF314HIP|/files/ENCFF314HIP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16469531 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KAT8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF734RIO|/files/ENCFF734RIO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF734RIO|/files/ENCFF734RIO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF314HIP|/files/ENCFF314HIP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF314HIP|/files/ENCFF314HIP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR086FZL | float |
TF_ChIP-seq_ENCSR086FZL |
TF_ChIP-seq ENCSR086FZL [biosample_summary="Homo sapiens K562" and target="KAT8"]
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[9.53, 1.29e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF113LBV.bed.gz | 25.49 KB | b6327521c4e0109dfa4e00bf99fc8dc3 |
| ENCFF113LBV.bed.gz.dvc | 99.0 B | a51bef3db6070ba306b26059c0e8bba1 |
| ENCFF113LBV.tabix.bed.gz | 17.46 KB | 8812ccff23bef0edd1089e3ea942c940 |
| ENCFF113LBV.tabix.bed.gz.dvc | 105.0 B | 80fbc7da9913a420ca4fde34b1f3f690 |
| ENCFF113LBV.tabix.bed.gz.tbi | 16.54 KB | 15df5b0b877d1c30c3110a20dd22bd57 |
| ENCFF113LBV.tabix.bed.gz.tbi.dvc | 109.0 B | 080b2cfad3de1f27f603cc0285efc222 |
| genomic_resource.yaml | 5.18 KB | b954d5df3e466a7979a33f3f793d4d7e |
| genomic_resource_original.yaml | 5.09 KB | 7a97bb8dc180db35abfb063c14918593 |
| statistics/ |