TF_ChIP-seq_ENCSR085QEV
TF_ChIP-seq ENCSR085QEV [biosample_summary="Homo sapiens K562" and target="NBN"]
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| Id: | TF_ChIP-seq/ENCSR085QEV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR085QEV [biosamplesummary="Homo sapiens K562" and target="NBN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN648RJC|/analyses/ENCAN648RJC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF728KKP|/files/ENCFF728KKP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF397LNB|/files/ENCFF397LNB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19148855 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NBN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF700WSI|/files/ENCFF700WSI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF700WSI|/files/ENCFF700WSI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR085QEV | float |
TF_ChIP-seq_ENCSR085QEV |
TF_ChIP-seq ENCSR085QEV [biosample_summary="Homo sapiens K562" and target="NBN"]
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[12.3, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF728KKP.bed.gz | 374.18 KB | 8dd1f3b760d18bb50be1a56c01c5bcf3 |
| ENCFF728KKP.bed.gz.dvc | 100.0 B | 4f18f34a6b66b31ba5741dc811b15888 |
| ENCFF728KKP.tabix.bed.gz | 277.21 KB | e29ccfc5d03282d99dd731c9f757bd48 |
| ENCFF728KKP.tabix.bed.gz.dvc | 106.0 B | 15170b33753f4fed62f9f7a40d084308 |
| ENCFF728KKP.tabix.bed.gz.tbi | 117.34 KB | eac6fdc2fa5fa34434742b44276ad45d |
| ENCFF728KKP.tabix.bed.gz.tbi.dvc | 110.0 B | 57a8ddf8fb09387787ad4430d91ac726 |
| genomic_resource.yaml | 3.32 KB | a672c7bb3ea225db16321f7a809d84b4 |
| genomic_resource_original.yaml | 3.23 KB | 96eb959ec9726e00b6832d3f80be28b7 |
| statistics/ |