TF_ChIP-seq_ENCSR085IXF
TF_ChIP-seq ENCSR085IXF [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="SP1"]
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| Id: | TF_ChIP-seq/ENCSR085IXF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR085IXF [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="SP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN417NJO|/analyses/ENCAN417NJO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN417NJO|/analyses/ENCAN417NJO/} has in progress subobject document {b38e9276-c462-42c4-816e-dac0bfbf53bf|/documents/b38e9276-c462-42c4-816e-dac0bfbf53bf/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF575PEF|/files/ENCFF575PEF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR085IXF | float |
TF_ChIP-seq_ENCSR085IXF |
TF_ChIP-seq ENCSR085IXF [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="SP1"]
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[7.3, 870] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF020ENV.bed.gz | 1.22 MB | 60d7ab1c282f187914a7038339ea6bb7 |
| ENCFF020ENV.bed.gz.dvc | 101.0 B | 1133a884f28efbde0f65eb6a6f490e33 |
| ENCFF020ENV.tabix.bed.gz | 888.75 KB | 2dcfdb947b710b935f4a4987cf2b2fd7 |
| ENCFF020ENV.tabix.bed.gz.dvc | 106.0 B | acb34edd5d1c3f51d827dd3468d6a65c |
| ENCFF020ENV.tabix.bed.gz.tbi | 302.18 KB | 2fe0578bf9d31b5dd8ca0c6223e79150 |
| ENCFF020ENV.tabix.bed.gz.tbi.dvc | 110.0 B | ddf4e240bd39ae127581c10f593eb1bd |
| genomic_resource.yaml | 2.55 KB | 417fad5d3f965b7b36082d5b531962b9 |
| genomic_resource_original.yaml | 2.39 KB | ce11c6d2ccae9052c910a6dc3962115f |
| statistics/ |