TF_ChIP-seq_ENCSR084WHZ
TF_ChIP-seq ENCSR084WHZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"]
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| Id: | TF_ChIP-seq/ENCSR084WHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR084WHZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN688JWD|/analyses/ENCAN688JWD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF979BLB|/files/ENCFF979BLB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF979BLB|/files/ENCFF979BLB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF952PLK|/files/ENCFF952PLK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF952PLK|/files/ENCFF952PLK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.96. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF974IPP|/files/ENCFF974IPP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 2.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR084WHZ | float |
TF_ChIP-seq_ENCSR084WHZ |
TF_ChIP-seq ENCSR084WHZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4" and target="FOXP4"]
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[10.8, 402] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF974IPP.bed.gz | 122.33 KB | 62139722a6541a40c878e0a4da63cd98 |
| ENCFF974IPP.bed.gz.dvc | 100.0 B | fb2c1d507fd178dcc6b89307d420ed96 |
| ENCFF974IPP.tabix.bed.gz | 86.54 KB | d0aa474ef34bbea25cde98e81febb851 |
| ENCFF974IPP.tabix.bed.gz.dvc | 105.0 B | 6d47c7f517f87b9a91267ba6c344951e |
| ENCFF974IPP.tabix.bed.gz.tbi | 50.25 KB | 4b6bad2aeef64cab9e29a1b062f9e031 |
| ENCFF974IPP.tabix.bed.gz.tbi.dvc | 109.0 B | 1030166f12d3e1fb306715730a46631a |
| genomic_resource.yaml | 4.75 KB | 5a44ae38edecaeceae20d5da2dcf88b5 |
| genomic_resource_original.yaml | 4.59 KB | bdfd660d398ea47643c44d5965c2a067 |
| statistics/ |