TF_ChIP-seq_ENCSR082QGT
TF_ChIP-seq ENCSR082QGT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784" and target="ZNF784"]
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| Id: | TF_ChIP-seq/ENCSR082QGT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR082QGT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784" and target="ZNF784"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN725WNF|/analyses/ENCAN725WNF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN725WNF|/analyses/ENCAN725WNF/} has in progress subobject document {55836162-1d96-40c7-b7e0-3520e9f944b0|/documents/55836162-1d96-40c7-b7e0-3520e9f944b0/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF694YBS|/files/ENCFF694YBS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF694YBS|/files/ENCFF694YBS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.40. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF829JXB|/files/ENCFF829JXB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF829JXB|/files/ENCFF829JXB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.87. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF645BZY|/files/ENCFF645BZY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF265UCH|/files/ENCFF265UCH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR082QGT | float |
TF_ChIP-seq_ENCSR082QGT |
TF_ChIP-seq ENCSR082QGT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784" and target="ZNF784"]
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[12.9, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF645BZY.bed.gz | 272.44 KB | 103c962a841dea8bd1a61203bdd249aa |
| ENCFF645BZY.bed.gz.dvc | 100.0 B | e42b1ef81b65a66898fd1a77b05683e2 |
| ENCFF645BZY.tabix.bed.gz | 212.31 KB | e7094e1f6e11aa285fafc9744b41f552 |
| ENCFF645BZY.tabix.bed.gz.dvc | 106.0 B | 4f6be7d9095c623c853c8e45bac3e63d |
| ENCFF645BZY.tabix.bed.gz.tbi | 88.67 KB | 3f64fde7ac97f484ef676948a6de4742 |
| ENCFF645BZY.tabix.bed.gz.tbi.dvc | 109.0 B | fb0a27681faaa3137a56ae76a94f66b0 |
| genomic_resource.yaml | 5.49 KB | 4736f33596cf7c42a232429deaeca16d |
| genomic_resource_original.yaml | 5.33 KB | 381ce2c15a86e293717035eb658bd3e0 |
| statistics/ |