TF_ChIP-seq_ENCSR079SHZ
TF_ChIP-seq ENCSR079SHZ [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"]
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| Id: | TF_ChIP-seq/ENCSR079SHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR079SHZ [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens OTX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN809ZZV|/analyses/ENCAN809ZZV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF182KZF|/files/ENCFF182KZF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF182KZF|/files/ENCFF182KZF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF059FGL|/files/ENCFF059FGL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF059FGL|/files/ENCFF059FGL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR079SHZ | float |
TF_ChIP-seq_ENCSR079SHZ |
TF_ChIP-seq ENCSR079SHZ [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OTX1" and target="OTX1"]
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[19.4, 2.06e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF302RKX.bed.gz | 137.56 KB | 7216b88ae031c8d1f5be8ee96b38d785 |
| ENCFF302RKX.bed.gz.dvc | 100.0 B | 9ab78cc5858ebb62d203586576e2d591 |
| ENCFF302RKX.tabix.bed.gz | 90.35 KB | 400cf60214d4f34581fab8d8c831b33d |
| ENCFF302RKX.tabix.bed.gz.dvc | 105.0 B | 082362b5df836c29123c987bdde0f67b |
| ENCFF302RKX.tabix.bed.gz.tbi | 51.4 KB | 6f841b79e85f216c4fa0e3f8d4803e67 |
| ENCFF302RKX.tabix.bed.gz.tbi.dvc | 109.0 B | b673960acceb822b8982fe3ba052dd95 |
| genomic_resource.yaml | 4.22 KB | 6694b264538ebedd99d43f0ee51ef54c |
| genomic_resource_original.yaml | 4.06 KB | b061f58859024bf8fdd9b228cf25400f |
| statistics/ |