TF_ChIP-seq_ENCSR076YPO
TF_ChIP-seq ENCSR076YPO [biosample_summary="Homo sapiens K562" and target="RNF2"]
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| Id: | TF_ChIP-seq/ENCSR076YPO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR076YPO [biosamplesummary="Homo sapiens K562" and target="RNF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN130JWR|/analyses/ENCAN130JWR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF708IYO|/files/ENCFF708IYO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19947085 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RNF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF513CNT|/files/ENCFF513CNT/}, {ENCFF972LPT|/files/ENCFF972LPT/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.86 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF578SVX|/files/ENCFF578SVX/}, {ENCFF359ZYF|/files/ENCFF359ZYF/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.86 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR076YPO | float |
TF_ChIP-seq_ENCSR076YPO |
TF_ChIP-seq ENCSR076YPO [biosample_summary="Homo sapiens K562" and target="RNF2"]
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[5.93, 399] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF972LPT.bed.gz | 298.38 KB | 1563fb6abad7b6e01e1a4b592835b343 |
| ENCFF972LPT.bed.gz.dvc | 100.0 B | dfaeba9e3ffea5f54547d9d7868b0c4e |
| ENCFF972LPT.tabix.bed.gz | 232.06 KB | 812a9fdf87ec2b5d26228db3e524f976 |
| ENCFF972LPT.tabix.bed.gz.dvc | 106.0 B | 6b678377167c9b376288dc4e34628575 |
| ENCFF972LPT.tabix.bed.gz.tbi | 110.58 KB | ec3132d94945605a1c212bdb09d846d6 |
| ENCFF972LPT.tabix.bed.gz.tbi.dvc | 110.0 B | cae09c099dd3b13af2fed1a26725ee8d |
| genomic_resource.yaml | 2.96 KB | 5274b119736c600555f18fdca6598e35 |
| genomic_resource_original.yaml | 2.87 KB | f143a9853b1f7e398124a1c72ef0fa4d |
| statistics/ |