| Id: | TF_ChIP-seq/ENCSR076STQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR076STQ [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44" and target="ZBTB44"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN836PBH|/analyses/ENCAN836PBH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF922WQN|/files/ENCFF922WQN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF488YFS|/files/ENCFF488YFS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF488YFS|/files/ENCFF488YFS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.48. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR076STQ | float |
TF_ChIP-seq_ENCSR076STQ |
TF_ChIP-seq ENCSR076STQ [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44" and target="ZBTB44"]
|
 |
[15, 7.18e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF922WQN.bed.gz | 364.16 KB | 1694a3a281235204df02c3d6e3fee2c3 |
| ENCFF922WQN.bed.gz.dvc | 100.0 B | 7591bbe1db28ff6ea24b797eb91d2246 |
| ENCFF922WQN.tabix.bed.gz | 243.12 KB | 8121eb69f5c9fbbd776469409d9328cf |
| ENCFF922WQN.tabix.bed.gz.dvc | 106.0 B | 14918d843b58fee3f16bea06750c93e3 |
| ENCFF922WQN.tabix.bed.gz.tbi | 133.25 KB | 21ea9a60f6618c00181dcaccf4c9e3b9 |
| ENCFF922WQN.tabix.bed.gz.tbi.dvc | 110.0 B | 7759b06f16351f92e88aaf4b8b0c846e |
| genomic_resource.yaml | 3.25 KB | 475c84be4ebb1b5e0add945f9a186ff0 |
| genomic_resource_original.yaml | 3.07 KB | 2b4f5de61cf9d26d7ddc1b0d8e9dc72f |
| statistics/ |