TF_ChIP-seq_ENCSR076KLJ
TF_ChIP-seq ENCSR076KLJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276" and target="ZNF276"]
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| Id: | TF_ChIP-seq/ENCSR076KLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR076KLJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276" and target="ZNF276"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN528IMR|/analyses/ENCAN528IMR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN528IMR|/analyses/ENCAN528IMR/} has in progress subobject document {0ec7d1a8-d419-4920-bd24-2c370fbfcc7f|/documents/0ec7d1a8-d419-4920-bd24-2c370fbfcc7f/} audit_warning: Processed alignments file {ENCFF869LME|/files/ENCFF869LME/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19629107 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF276-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF540TYN|/files/ENCFF540TYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18871270 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF276-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF869LME|/files/ENCFF869LME/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF869LME|/files/ENCFF869LME/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF540TYN|/files/ENCFF540TYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF540TYN|/files/ENCFF540TYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR076KLJ | float |
TF_ChIP-seq_ENCSR076KLJ |
TF_ChIP-seq ENCSR076KLJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276" and target="ZNF276"]
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[9.31, 907] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF451VTH.bed.gz | 184.96 KB | 38fef201551d9f3b1982643fc2e0ee28 |
| ENCFF451VTH.bed.gz.dvc | 100.0 B | 00f26d26f7476e7f71604f0420c0c07d |
| ENCFF451VTH.tabix.bed.gz | 149.75 KB | a49ad6038bf51f54a1bc2d8660ece4e3 |
| ENCFF451VTH.tabix.bed.gz.dvc | 106.0 B | 891d689b997dfc109ae5c055808fff5d |
| ENCFF451VTH.tabix.bed.gz.tbi | 71.19 KB | ca84c4899ef5c19b28cb76b8b08b79b0 |
| ENCFF451VTH.tabix.bed.gz.tbi.dvc | 109.0 B | 023c3bfb8190598773fd8f5378421fff |
| genomic_resource.yaml | 5.42 KB | 8a6dd3c745401c346e2454b7864bcbce |
| genomic_resource_original.yaml | 5.26 KB | 2c14bf443b26fc9f9cbd9321e34b8793 |
| statistics/ |