TF_ChIP-seq_ENCSR075PWK
TF_ChIP-seq ENCSR075PWK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225" and target="ZNF225"]
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| Id: | TF_ChIP-seq/ENCSR075PWK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR075PWK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225" and target="ZNF225"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN909UAE|/analyses/ENCAN909UAE/} has replaced subobject file {ce9ae3a0-39da-46e3-9800-f69090fcbe65|/files/ce9ae3a0-39da-46e3-9800-f69090fcbe65/} audit_internal_action: Released analysis {ENCAN909UAE|/analyses/ENCAN909UAE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN909UAE|/analyses/ENCAN909UAE/} has in progress subobject document {e0457afb-a32b-4445-ac98-4f13eceed021|/documents/e0457afb-a32b-4445-ac98-4f13eceed021/} audit_internal_action: Released analysis {ENCAN909UAE|/analyses/ENCAN909UAE/} has replaced subobject file {44a427c4-4975-4006-89b3-5f5718abc22a|/files/44a427c4-4975-4006-89b3-5f5718abc22a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF900UCZ|/files/ENCFF900UCZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF900UCZ|/files/ENCFF900UCZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF487BLH|/files/ENCFF487BLH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF487BLH|/files/ENCFF487BLH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR075PWK | float |
TF_ChIP-seq_ENCSR075PWK |
TF_ChIP-seq ENCSR075PWK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225" and target="ZNF225"]
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[12.4, 496] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF186RPU.bed.gz | 210.56 KB | 6f4a0f82b1123ffc620bd6761f79d0cb |
| ENCFF186RPU.bed.gz.dvc | 100.0 B | 9062e9a289a88f1482beedbca45044dc |
| ENCFF186RPU.tabix.bed.gz | 168.06 KB | d33478d4d1b22c817b4ebc691cce1b85 |
| ENCFF186RPU.tabix.bed.gz.dvc | 106.0 B | 8c7cc9fb320b3139b04a2e878a80c262 |
| ENCFF186RPU.tabix.bed.gz.tbi | 79.43 KB | 9e5b51fec190a74bad341d29c9a49967 |
| ENCFF186RPU.tabix.bed.gz.tbi.dvc | 109.0 B | c11ddbb8f9b3b1e602de0b374b6f37bd |
| genomic_resource.yaml | 4.85 KB | 6fd2116aedeeb460afd2e06c9cc39cbc |
| genomic_resource_original.yaml | 4.69 KB | fb1ddfa1c0c00829fca94b5bda0d8c1c |
| statistics/ |