TF_ChIP-seq_ENCSR075NRV
TF_ChIP-seq ENCSR075NRV [biosample_summary="Homo sapiens B cell male adult (22 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR075NRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR075NRV [biosamplesummary="Homo sapiens B cell male adult (22 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (22 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN553WYL|/analyses/ENCAN553WYL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF463NVT|/files/ENCFF463NVT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF463NVT|/files/ENCFF463NVT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR075NRV | float |
TF_ChIP-seq_ENCSR075NRV |
TF_ChIP-seq ENCSR075NRV [biosample_summary="Homo sapiens B cell male adult (22 years)" and target="CTCF"]
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[7.89, 338] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292JVA.bed.gz | 834.59 KB | da9c169bfaebb45502b70a5d347aa332 |
| ENCFF292JVA.bed.gz.dvc | 100.0 B | 40de41486e33124d2a57faa1bec59d0f |
| ENCFF292JVA.tabix.bed.gz | 658.55 KB | f1f088d79f1a9801a54f5dc109a6f1c6 |
| ENCFF292JVA.tabix.bed.gz.dvc | 106.0 B | 63c9dfdafc1de650700eb66d3c647472 |
| ENCFF292JVA.tabix.bed.gz.tbi | 228.05 KB | 6bc686657e7e8f98d375220328169c46 |
| ENCFF292JVA.tabix.bed.gz.tbi.dvc | 110.0 B | b49db81150f44ca81b047691c9a843fa |
| genomic_resource.yaml | 2.7 KB | 414c8c0065e40fdebfc982cb89500470 |
| genomic_resource_original.yaml | 2.58 KB | 7a3821c56c6c6b8b31d3ea17e95cec78 |
| statistics/ |