TF_ChIP-seq_ENCSR075HTM
TF_ChIP-seq ENCSR075HTM [biosample_summary="Homo sapiens K562" and target="HDAC2"]
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| Id: | TF_ChIP-seq/ENCSR075HTM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR075HTM [biosamplesummary="Homo sapiens K562" and target="HDAC2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN607MNQ|/analyses/ENCAN607MNQ/} has in progress subobject document {d0cd3fd1-43ab-4445-b2c8-97801c1b448b|/documents/d0cd3fd1-43ab-4445-b2c8-97801c1b448b/} audit_internal_action: Released analysis {ENCAN607MNQ|/analyses/ENCAN607MNQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF570EKM|/files/ENCFF570EKM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF570EKM|/files/ENCFF570EKM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR075HTM | float |
TF_ChIP-seq_ENCSR075HTM |
TF_ChIP-seq ENCSR075HTM [biosample_summary="Homo sapiens K562" and target="HDAC2"]
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[11.9, 2.07e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652ZZF.bed.gz | 498.06 KB | b1e746310772ec80ad00da97e6f99b10 |
| ENCFF652ZZF.bed.gz.dvc | 100.0 B | 3434fbf873db38e45a9279f5fe2b4bea |
| ENCFF652ZZF.tabix.bed.gz | 395.21 KB | a26aaf8f969dba61dcd566be642cce8d |
| ENCFF652ZZF.tabix.bed.gz.dvc | 106.0 B | eaea9179632785163fd7f0d58cf404c4 |
| ENCFF652ZZF.tabix.bed.gz.tbi | 148.21 KB | 69935a0b711d703f4bac65a8cd62b1a7 |
| ENCFF652ZZF.tabix.bed.gz.tbi.dvc | 110.0 B | 9b150631089c5c25c3b1fe5860ae64fa |
| genomic_resource.yaml | 2.87 KB | 2f43788c75db864f141196617050c751 |
| genomic_resource_original.yaml | 2.78 KB | 877799c33121178adcc31414976af5e6 |
| statistics/ |