TF_ChIP-seq_ENCSR075FNZ
TF_ChIP-seq ENCSR075FNZ [biosample_summary="Homo sapiens GM12878" and target="ZNF622"]
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| Id: | TF_ChIP-seq/ENCSR075FNZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR075FNZ [biosamplesummary="Homo sapiens GM12878" and target="ZNF622"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF777DVJ|/files/ENCFF777DVJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN089BKF|/analyses/ENCAN089BKF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF993SEE|/files/ENCFF993SEE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF993SEE|/files/ENCFF993SEE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.74. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF717ZWZ|/files/ENCFF717ZWZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF717ZWZ|/files/ENCFF717ZWZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.44. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF777DVJ|/files/ENCFF777DVJ/}, {ENCFF778TKQ|/files/ENCFF778TKQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 2.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF368DYQ|/files/ENCFF368DYQ/}, {ENCFF191OAE|/files/ENCFF191OAE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 2.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR075FNZ | float |
TF_ChIP-seq_ENCSR075FNZ |
TF_ChIP-seq ENCSR075FNZ [biosample_summary="Homo sapiens GM12878" and target="ZNF622"]
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[26.4, 2.23e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF777DVJ.bed.gz | 4.77 KB | c7cc25ad5d0a9958ba90a0a60d9eda4d |
| ENCFF777DVJ.bed.gz.dvc | 98.0 B | 1e58c99d32105996751aa0f1bd61830a |
| ENCFF777DVJ.tabix.bed.gz | 3.09 KB | 9eadbe261afeade03ba0b20ad811501b |
| ENCFF777DVJ.tabix.bed.gz.dvc | 104.0 B | 1aa51e263ac21617a7a427a011aa54f1 |
| ENCFF777DVJ.tabix.bed.gz.tbi | 6.49 KB | a640d3fa6eb24ffe5b3a96bfe31e334e |
| ENCFF777DVJ.tabix.bed.gz.tbi.dvc | 108.0 B | 69daa9716e7a912de595fe205e4f6069 |
| genomic_resource.yaml | 5.27 KB | 398010245f5a1650cf1688c8cede5842 |
| genomic_resource_original.yaml | 5.17 KB | 573c689846252213158d667cd6965415 |
| statistics/ |