TF_ChIP-seq_ENCSR075BAS
TF_ChIP-seq ENCSR075BAS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17" and target="ZNF17"]
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| Id: | TF_ChIP-seq/ENCSR075BAS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR075BAS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17" and target="ZNF17"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN770HLZ|/analyses/ENCAN770HLZ/} has in progress subobject document {3df25d7e-cd33-49c4-a46c-936cbd2b036c|/documents/3df25d7e-cd33-49c4-a46c-936cbd2b036c/} audit_internal_action: Released analysis {ENCAN770HLZ|/analyses/ENCAN770HLZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF461XOH|/files/ENCFF461XOH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF461XOH|/files/ENCFF461XOH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF581CFO|/files/ENCFF581CFO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF581CFO|/files/ENCFF581CFO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR075BAS | float |
TF_ChIP-seq_ENCSR075BAS |
TF_ChIP-seq ENCSR075BAS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17" and target="ZNF17"]
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[10.1, 420] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF300AER.bed.gz | 47.08 KB | 7c9116d209453f9d57ceb8b9edbddd60 |
| ENCFF300AER.bed.gz.dvc | 99.0 B | 0358c5e92469d27f5c29c6004e536787 |
| ENCFF300AER.tabix.bed.gz | 34.76 KB | 7ead22eeadb98789e0ee47651073649d |
| ENCFF300AER.tabix.bed.gz.dvc | 105.0 B | a4b45c1734eeae82e0c19c390889b85f |
| ENCFF300AER.tabix.bed.gz.tbi | 23.46 KB | 3913098e0a74f4759d040bba8f237585 |
| ENCFF300AER.tabix.bed.gz.tbi.dvc | 109.0 B | 4fa6f19c72f908b66d2d56bee198c32c |
| genomic_resource.yaml | 4.44 KB | 781c8971ed7a1dd2c1037b466b8b904f |
| genomic_resource_original.yaml | 4.28 KB | 97bfaaab1f56f3bb01b8a1e6ecc24e61 |
| statistics/ |