TF_ChIP-seq_ENCSR072VUO
TF_ChIP-seq ENCSR072VUO [biosample_summary="Homo sapiens K562" and target="SAFB"]
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| Id: | TF_ChIP-seq/ENCSR072VUO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR072VUO [biosamplesummary="Homo sapiens K562" and target="SAFB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF411YVY|/files/ENCFF411YVY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released analysis {ENCAN094UON|/analyses/ENCAN094UON/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF377YBU|/files/ENCFF377YBU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15167624 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SAFB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF751EVN|/files/ENCFF751EVN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13114990 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SAFB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF411YVY|/files/ENCFF411YVY/}, {ENCFF063ZIT|/files/ENCFF063ZIT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF916WYW|/files/ENCFF916WYW/}, {ENCFF767JNB|/files/ENCFF767JNB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 2.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR072VUO | float |
TF_ChIP-seq_ENCSR072VUO |
TF_ChIP-seq ENCSR072VUO [biosample_summary="Homo sapiens K562" and target="SAFB"]
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[4.17, 620] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF411YVY.bed.gz | 101.05 KB | 6515f239fea878af719b52d4479c71f1 |
| ENCFF411YVY.bed.gz.dvc | 100.0 B | 9bd2db9e903e6be2fbc44c279efc0bb8 |
| ENCFF411YVY.tabix.bed.gz | 78.49 KB | 5db95a2737409d7039f45fb211cd9abb |
| ENCFF411YVY.tabix.bed.gz.dvc | 105.0 B | 6aa966d2c32fb912f1c492f64bd877b8 |
| ENCFF411YVY.tabix.bed.gz.tbi | 48.64 KB | b60e52fe0435520134ebc31a12fc2adf |
| ENCFF411YVY.tabix.bed.gz.tbi.dvc | 109.0 B | dee2847c9e1f39ff983216ba34f66d89 |
| genomic_resource.yaml | 3.65 KB | 3c0f4bc8707a00b6faab9daeb97e04c9 |
| genomic_resource_original.yaml | 3.55 KB | f4b733432615f54eb0565a31557f254b |
| statistics/ |