TF_ChIP-seq_ENCSR072PWP
TF_ChIP-seq ENCSR072PWP [biosample_summary="Homo sapiens GM12878" and target="ZNF24"]
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| Id: | TF_ChIP-seq/ENCSR072PWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR072PWP [biosamplesummary="Homo sapiens GM12878" and target="ZNF24"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN635HAB|/analyses/ENCAN635HAB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF502XOF|/files/ENCFF502XOF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF502XOF|/files/ENCFF502XOF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.31. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF431JBK|/files/ENCFF431JBK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF431JBK|/files/ENCFF431JBK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR072PWP | float |
TF_ChIP-seq_ENCSR072PWP |
TF_ChIP-seq ENCSR072PWP [biosample_summary="Homo sapiens GM12878" and target="ZNF24"]
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[13.4, 6.57e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF103OOV.bed.gz | 327.27 KB | dc50267f97e94c42ba040408571a95a8 |
| ENCFF103OOV.bed.gz.dvc | 100.0 B | 200d67aeb3bda132b059b15a47dad334 |
| ENCFF103OOV.tabix.bed.gz | 219.14 KB | 147e230c61dbd9fe92fb49f3ee2ae37e |
| ENCFF103OOV.tabix.bed.gz.dvc | 106.0 B | 353ffec823e48fb50b80801680c4dfd9 |
| ENCFF103OOV.tabix.bed.gz.tbi | 125.47 KB | 669074f92fd5c8e2544b1555c5422fdb |
| ENCFF103OOV.tabix.bed.gz.tbi.dvc | 110.0 B | 754a55e9690f8846a73714335aae68ae |
| genomic_resource.yaml | 3.95 KB | 7bbe583935b92c6ca762d8795e6a1714 |
| genomic_resource_original.yaml | 3.85 KB | d96150e894f974e5c2361a384418c4eb |
| statistics/ |