| Id: | TF_ChIP-seq/ENCSR072LQF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR072LQF [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76" and target="ZNF76"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN369QNV|/analyses/ENCAN369QNV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF026ZLM|/files/ENCFF026ZLM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18254315 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF76-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF107XYH|/files/ENCFF107XYH/}, {ENCFF796MFI|/files/ENCFF796MFI/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF731DTH|/files/ENCFF731DTH/}, {ENCFF911JRU|/files/ENCFF911JRU/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR072LQF | float |
TF_ChIP-seq_ENCSR072LQF |
TF_ChIP-seq ENCSR072LQF [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76" and target="ZNF76"]
|
 |
[11.8, 4.19e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF796MFI.bed.gz | 342.75 KB | f2a7c8c2ffcfcc315ccbabbf05ef0edc |
| ENCFF796MFI.bed.gz.dvc | 100.0 B | 68144fde069b604e1d306476d1693178 |
| ENCFF796MFI.tabix.bed.gz | 253.61 KB | d21386a394a665131ebeeffda1d802b5 |
| ENCFF796MFI.tabix.bed.gz.dvc | 106.0 B | 0fb4689fff6fe06a85850fa9ea9a7915 |
| ENCFF796MFI.tabix.bed.gz.tbi | 115.66 KB | d083098bb38172517002bc526009b885 |
| ENCFF796MFI.tabix.bed.gz.tbi.dvc | 110.0 B | 3a6f36ed2c63933535e58690cf88375f |
| genomic_resource.yaml | 3.38 KB | 55feccdcc4e8836d3b6612767a06993d |
| genomic_resource_original.yaml | 3.2 KB | 1e721bda82342031fa0f546f1fb70b98 |
| statistics/ |