| Id: | TF_ChIP-seq/ENCSR070HWF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR070HWF [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768" and target="ZNF768"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF713BAD|/files/ENCFF713BAD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN290YCM|/analyses/ENCAN290YCM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF181QKX|/files/ENCFF181QKX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF181QKX|/files/ENCFF181QKX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.83. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR070HWF | float |
TF_ChIP-seq_ENCSR070HWF |
TF_ChIP-seq ENCSR070HWF [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768" and target="ZNF768"]
|
 |
[17.8, 1.02e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF713BAD.bed.gz | 140.0 KB | f4219627b1a9d47ec3fd2c6dce00021f |
| ENCFF713BAD.bed.gz.dvc | 100.0 B | 0561267216bc13995acc9ca2252e729f |
| ENCFF713BAD.tabix.bed.gz | 93.79 KB | 1aef946bbae4b82d6767138685ae2d71 |
| ENCFF713BAD.tabix.bed.gz.dvc | 105.0 B | 45da7bdce34a623849bf8ce0606c9cbe |
| ENCFF713BAD.tabix.bed.gz.tbi | 62.62 KB | 2a2e7e3efeac2db2e7cd46e51f83b9dc |
| ENCFF713BAD.tabix.bed.gz.tbi.dvc | 109.0 B | 1815cf6003b35c093771fa27c73a7686 |
| genomic_resource.yaml | 3.25 KB | 19f8683553d0773fdb10e68b01f22341 |
| genomic_resource_original.yaml | 3.07 KB | 1b644eb49e75caf04bb985baa9d1d841 |
| statistics/ |