TF_ChIP-seq_ENCSR068HEE
TF_ChIP-seq ENCSR068HEE [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR068HEE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR068HEE [biosamplesummary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (60 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN578CBC|/analyses/ENCAN578CBC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF912EFR|/files/ENCFF912EFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF912EFR|/files/ENCFF912EFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.36. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF284EIV|/files/ENCFF284EIV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR068HEE | float |
TF_ChIP-seq_ENCSR068HEE |
TF_ChIP-seq ENCSR068HEE [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)" and target="CTCF"]
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[5.86, 757] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF284EIV.bed.gz | 906.01 KB | 05ad23ff3a595ccb59a8ad84674ed550 |
| ENCFF284EIV.bed.gz.dvc | 100.0 B | e8ce4781c69e044486e94f43ef92e263 |
| ENCFF284EIV.tabix.bed.gz | 601.02 KB | 05a61c248690e40a09d997541bc125c4 |
| ENCFF284EIV.tabix.bed.gz.dvc | 106.0 B | f802c3dec33de3536ad8d1a1ff4541d8 |
| ENCFF284EIV.tabix.bed.gz.tbi | 291.42 KB | 8f09c75623c047fa4d52fbf71204fb36 |
| ENCFF284EIV.tabix.bed.gz.tbi.dvc | 110.0 B | 66a1b25cebc50990f278f6e3e5d775bc |
| genomic_resource.yaml | 3.33 KB | 8c34ba62472277fd956fd39930baccfa |
| genomic_resource_original.yaml | 3.18 KB | 9f74374394448c4a6990bab9a878b67f |
| statistics/ |