TF_ChIP-seq_ENCSR066TET
TF_ChIP-seq ENCSR066TET [biosample_summary="Homo sapiens MCF-7" and target="RFX1"]
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| Id: | TF_ChIP-seq/ENCSR066TET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR066TET [biosamplesummary="Homo sapiens MCF-7" and target="RFX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN572HLO|/analyses/ENCAN572HLO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF902IUI|/files/ENCFF902IUI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF902IUI|/files/ENCFF902IUI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR066TET | float |
TF_ChIP-seq_ENCSR066TET |
TF_ChIP-seq ENCSR066TET [biosample_summary="Homo sapiens MCF-7" and target="RFX1"]
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[14.8, 4.09e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF150TBK.bed.gz | 471.68 KB | 3b7244abb3c710105e4641632bb37970 |
| ENCFF150TBK.bed.gz.dvc | 100.0 B | 67a1a68c0900dd16c333aa9d76cc0702 |
| ENCFF150TBK.tabix.bed.gz | 324.92 KB | 1a52e576211dece3cbf4be8cf4e4a269 |
| ENCFF150TBK.tabix.bed.gz.dvc | 106.0 B | d92d55e743a45e569a79326341eeea53 |
| ENCFF150TBK.tabix.bed.gz.tbi | 179.61 KB | 24d2a1727d6ac17b64a224ae4208e6b4 |
| ENCFF150TBK.tabix.bed.gz.tbi.dvc | 110.0 B | 2a418b230f021b4acb24fde041bc52aa |
| genomic_resource.yaml | 2.64 KB | 273fea84a526c19e57083ab18b2b72f4 |
| genomic_resource_original.yaml | 2.55 KB | c96723f6b06701390cb9cedb62aba51f |
| statistics/ |