TF_ChIP-seq_ENCSR066FXN
TF_ChIP-seq ENCSR066FXN [biosample_summary="Homo sapiens HepG2" and target="HNRNPH1"]
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| Id: | TF_ChIP-seq/ENCSR066FXN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR066FXN [biosamplesummary="Homo sapiens HepG2" and target="HNRNPH1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN647XDO|/analyses/ENCAN647XDO/} has in progress subobject document {cf20af51-3c7e-467f-a966-92a1bd075d60|/documents/cf20af51-3c7e-467f-a966-92a1bd075d60/} audit_internal_action: Released analysis {ENCAN647XDO|/analyses/ENCAN647XDO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF403UNL|/files/ENCFF403UNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17847486 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPH1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF486RNL|/files/ENCFF486RNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17249861 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HNRNPH1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF486RNL|/files/ENCFF486RNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF486RNL|/files/ENCFF486RNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR066FXN | float |
TF_ChIP-seq_ENCSR066FXN |
TF_ChIP-seq ENCSR066FXN [biosample_summary="Homo sapiens HepG2" and target="HNRNPH1"]
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[6.33, 489] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF055HMB.bed.gz | 45.74 KB | 8df12dca19cf7c30163da756f8c39be8 |
| ENCFF055HMB.bed.gz.dvc | 99.0 B | 55705393147741114b95ffe0a5500c2d |
| ENCFF055HMB.tabix.bed.gz | 35.13 KB | 8ab7491449053d929a41df15c009c345 |
| ENCFF055HMB.tabix.bed.gz.dvc | 105.0 B | 4db10281d6fb8d9327334a0e53bf2ec9 |
| ENCFF055HMB.tabix.bed.gz.tbi | 23.65 KB | 827ee188c338f4e4e6caa963fa86544d |
| ENCFF055HMB.tabix.bed.gz.tbi.dvc | 109.0 B | ebbc69ccf3f6862758197f680ec7c74e |
| genomic_resource.yaml | 3.9 KB | 1787d534773fef9f2e065dc81daedd1b |
| genomic_resource_original.yaml | 3.8 KB | 416d8c7ef7754cf745239bb07f08311a |
| statistics/ |