TF_ChIP-seq_ENCSR066EWR
TF_ChIP-seq ENCSR066EWR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2" and target="ZMYM2"]
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| Id: | TF_ChIP-seq/ENCSR066EWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR066EWR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2" and target="ZMYM2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN667VAB|/analyses/ENCAN667VAB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF394KIH|/files/ENCFF394KIH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF394KIH|/files/ENCFF394KIH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF374KFT|/files/ENCFF374KFT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF374KFT|/files/ENCFF374KFT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR066EWR | float |
TF_ChIP-seq_ENCSR066EWR |
TF_ChIP-seq ENCSR066EWR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2" and target="ZMYM2"]
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[10.4, 469] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF743CDY.bed.gz | 367.28 KB | 29c1a3b4b17eca3a8bda86687c7746ec |
| ENCFF743CDY.bed.gz.dvc | 100.0 B | 4998d5f23b88348e42147845afa2416e |
| ENCFF743CDY.tabix.bed.gz | 286.72 KB | 38534ebd12a996fe181190fba0e861e2 |
| ENCFF743CDY.tabix.bed.gz.dvc | 106.0 B | 607210bb4f0dfc48b5d97e71c7110ab6 |
| ENCFF743CDY.tabix.bed.gz.tbi | 109.99 KB | 1daaeccb83ba05fc5fa0fad87d03d1ea |
| ENCFF743CDY.tabix.bed.gz.tbi.dvc | 110.0 B | 3fc3089c950ddeeb872d98a4d6d9d4a5 |
| genomic_resource.yaml | 4.23 KB | 9fd72bd7d2507dd7f8a469f3f7f7f99e |
| genomic_resource_original.yaml | 4.07 KB | 0e6420870da11d4496c46e1cd5f1c328 |
| statistics/ |