TF_ChIP-seq_ENCSR065XVO
TF_ChIP-seq ENCSR065XVO [biosample_summary="Homo sapiens K562" and target="CHAMP1"]
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| Id: | TF_ChIP-seq/ENCSR065XVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR065XVO [biosamplesummary="Homo sapiens K562" and target="CHAMP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN256AEI|/analyses/ENCAN256AEI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN256AEI|/analyses/ENCAN256AEI/} has in progress subobject document {30163601-94d9-4633-bf60-058cc15680a0|/documents/30163601-94d9-4633-bf60-058cc15680a0/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF437IAU|/files/ENCFF437IAU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF437IAU|/files/ENCFF437IAU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.95. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF319UVS|/files/ENCFF319UVS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF319UVS|/files/ENCFF319UVS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR065XVO | float |
TF_ChIP-seq_ENCSR065XVO |
TF_ChIP-seq ENCSR065XVO [biosample_summary="Homo sapiens K562" and target="CHAMP1"]
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[15.2, 960] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF515GUE.bed.gz | 238.88 KB | fa3462b9ecf71bbc5074e24b20314b72 |
| ENCFF515GUE.bed.gz.dvc | 100.0 B | c32bcf121ca54259bbf3bb3574ed418e |
| ENCFF515GUE.tabix.bed.gz | 169.93 KB | 0592ae217ed071018759db5963961aef |
| ENCFF515GUE.tabix.bed.gz.dvc | 106.0 B | 366c4e29bf6105f8e414675484e03173 |
| ENCFF515GUE.tabix.bed.gz.tbi | 83.66 KB | bc0ca622a1f8062c5f2ae906f05804aa |
| ENCFF515GUE.tabix.bed.gz.tbi.dvc | 109.0 B | d42c1b01ad15d6d35fa4b3542f738f7e |
| genomic_resource.yaml | 4.19 KB | 88fe46c5e4864d5c60eb558208d6f9bd |
| genomic_resource_original.yaml | 4.09 KB | 72600542ac0561593c9ec4a4f047c4e7 |
| statistics/ |