TF_ChIP-seq_ENCSR063FUV
TF_ChIP-seq ENCSR063FUV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"]
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| Id: | TF_ChIP-seq/ENCSR063FUV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR063FUV [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN067YEW|/analyses/ENCAN067YEW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF137RZE|/files/ENCFF137RZE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF137RZE|/files/ENCFF137RZE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF737PNY|/files/ENCFF737PNY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF737PNY|/files/ENCFF737PNY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR063FUV | float |
TF_ChIP-seq_ENCSR063FUV |
TF_ChIP-seq ENCSR063FUV [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"]
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[11.6, 826] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF715DQS.bed.gz | 137.09 KB | 81e0c3eae0582eb8b725e99cf29180fc |
| ENCFF715DQS.bed.gz.dvc | 100.0 B | b1522ededfa77ce2cbbae56421363895 |
| ENCFF715DQS.tabix.bed.gz | 103.54 KB | f30de6dee6ad1cbc531168d7028f46fc |
| ENCFF715DQS.tabix.bed.gz.dvc | 106.0 B | 8a19929c28f6d1cf0e6759b254615d29 |
| ENCFF715DQS.tabix.bed.gz.tbi | 62.48 KB | 9d61142235f106823603bb75f793e7af |
| ENCFF715DQS.tabix.bed.gz.tbi.dvc | 109.0 B | 23e1adde504c6c0a8b232e9490d5727d |
| genomic_resource.yaml | 4.24 KB | a2d0ea15cbb0c7da21c513f894f2661c |
| genomic_resource_original.yaml | 4.07 KB | 4fa121febe3585fb1a75aee7facc3bdc |
| statistics/ |