TF_ChIP-seq_ENCSR062TDX
TF_ChIP-seq ENCSR062TDX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL2" and target="SALL2"]
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| Id: | TF_ChIP-seq/ENCSR062TDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR062TDX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL2" and target="SALL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SALL2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN505XPY|/analyses/ENCAN505XPY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF233KSC|/files/ENCFF233KSC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF233KSC|/files/ENCFF233KSC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.35. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF359GMV|/files/ENCFF359GMV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF359GMV|/files/ENCFF359GMV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR062TDX | float |
TF_ChIP-seq_ENCSR062TDX |
TF_ChIP-seq ENCSR062TDX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL2" and target="SALL2"]
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[10.1, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF437PVG.bed.gz | 319.48 KB | 42e562d563e74e3379e543a13abd8808 |
| ENCFF437PVG.bed.gz.dvc | 100.0 B | 35a997f2af0ebd7a28b1df075d9ae7a3 |
| ENCFF437PVG.tabix.bed.gz | 257.62 KB | b5d673ae2a13553abafe94df70616c64 |
| ENCFF437PVG.tabix.bed.gz.dvc | 106.0 B | f25fa7aa28b4c228a3848b0b1cdcb2b5 |
| ENCFF437PVG.tabix.bed.gz.tbi | 104.45 KB | fcd6d62c467ed8909b021b6025cab38a |
| ENCFF437PVG.tabix.bed.gz.tbi.dvc | 110.0 B | b34788a0f7d0918ce04bf6cfd5965367 |
| genomic_resource.yaml | 4.23 KB | 15845e3c98eb4fd484393c73e7ca3781 |
| genomic_resource_original.yaml | 4.07 KB | 92554f1b24e1a360cb60c7e43ec32f95 |
| statistics/ |