TF_ChIP-seq_ENCSR062HDL
TF_ChIP-seq ENCSR062HDL [biosample_summary="Homo sapiens MCF-7" and target="HSF1"]
×
| Id: | TF_ChIP-seq/ENCSR062HDL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR062HDL [biosamplesummary="Homo sapiens MCF-7" and target="HSF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN148GWQ|/analyses/ENCAN148GWQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN148GWQ|/analyses/ENCAN148GWQ/} has in progress subobject document {78230667-1d9a-403d-a403-ecf8425f2db9|/documents/78230667-1d9a-403d-a403-ecf8425f2db9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF952HET|/files/ENCFF952HET/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF952HET|/files/ENCFF952HET/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.22. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF766UTT|/files/ENCFF766UTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 2.42. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR062HDL | float |
TF_ChIP-seq_ENCSR062HDL |
TF_ChIP-seq ENCSR062HDL [biosample_summary="Homo sapiens MCF-7" and target="HSF1"]
|
|
[12.1, 2e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF766UTT.bed.gz | 18.4 KB | d26755d77b5974f057c241ce961aba43 |
| ENCFF766UTT.bed.gz.dvc | 99.0 B | da301b01c77e822f860733a49686cf26 |
| ENCFF766UTT.tabix.bed.gz | 11.78 KB | 583dd7ee1f1512dc3a38795d66e9b417 |
| ENCFF766UTT.tabix.bed.gz.dvc | 105.0 B | 6ec5eb47a4e17d943403803bae057338 |
| ENCFF766UTT.tabix.bed.gz.tbi | 13.3 KB | eaa1ba3b4dd759c1fc26f1f8a7260ef5 |
| ENCFF766UTT.tabix.bed.gz.tbi.dvc | 109.0 B | e740aede3380ac5dc7de5ccefe7a20cd |
| genomic_resource.yaml | 3.41 KB | e7a3682daef0cb80a7a4d7219621177d |
| genomic_resource_original.yaml | 3.31 KB | 00f11d82af908d509be748b9e11c6279 |
| statistics/ |