type: position_score
table:
  filename: ENCFF735WFO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR061DGF
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR061DGF [TISSUE: Homo sapiens GM23338 originated from GM23248,
    TARGET: NANOG]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN497WXY|/analyses/ENCAN497WXY/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF131FBY|/files/ENCFF131FBY/}, {ENCFF509ILA|/files/ENCFF509ILA/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.36 and\
    \ a self consistency ratio of 2.67. According to ENCODE standards, having both\
    \ rescue ratio and self consistency ratio values < 2 is recommended, but having\
    \ only one of the ratio values < 2 is acceptable.\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF735WFO|/files/ENCFF735WFO/},\
    \ {ENCFF466GNI|/files/ENCFF466GNI/} processed by ChIP-seq ENCODE3 hg19 pipeline\
    \ have a rescue ratio of 1.36 and a self consistency ratio of 2.67. According\
    \ to ENCODE standards, having both rescue ratio and self consistency ratio values\
    \ < 2 is recommended, but having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR061DGF
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM23338 originated from GM23248
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0007950/
    perturbed: false
    doi: 10.17989/ENCSR061DGF
    date_created: '2015-12-16T21:50:39.153617+00:00'
    date_released: '2016-06-30'
    submitter_comment: As of March 6th, 2018, this experiment has been moved from
      'archived' to 'released' due to an antibody exemption from the ENCODE Antibody
      Review Board.
    target: NANOG
