TF_ChIP-seq_ENCSR059BWP
TF_ChIP-seq ENCSR059BWP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHTF2" and target="PHTF2"]
×
| Id: | TF_ChIP-seq/ENCSR059BWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR059BWP [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHTF2" and target="PHTF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PHTF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN569JAG|/analyses/ENCAN569JAG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF582IFQ|/files/ENCFF582IFQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF582IFQ|/files/ENCFF582IFQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF035KPN|/files/ENCFF035KPN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF035KPN|/files/ENCFF035KPN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.32. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR059BWP | float |
TF_ChIP-seq_ENCSR059BWP |
TF_ChIP-seq ENCSR059BWP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHTF2" and target="PHTF2"]
|
|
[15.8, 542] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF130WQT.bed.gz | 31.33 KB | 0fb608052257a5b898591df2c59e9cfb |
| ENCFF130WQT.bed.gz.dvc | 99.0 B | 31454daef2389d828902d7b2742cad1f |
| ENCFF130WQT.tabix.bed.gz | 19.79 KB | b1b55bb259f9582adae5f91f42ce4e35 |
| ENCFF130WQT.tabix.bed.gz.dvc | 105.0 B | 310ef3e59d00043be6bf1b1607a6b692 |
| ENCFF130WQT.tabix.bed.gz.tbi | 18.05 KB | 0b49685932b0fe1460ba0f942925b6a9 |
| ENCFF130WQT.tabix.bed.gz.tbi.dvc | 109.0 B | 0e21a6447b3d811f7565f30c7d1b6f44 |
| genomic_resource.yaml | 4.23 KB | d148c179f13de05814c952a129cbfc0d |
| genomic_resource_original.yaml | 4.07 KB | 70335e5b179421e9353da59842193dfb |
| statistics/ |