| Id: | TF_ChIP-seq/ENCSR057DTZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR057DTZ [biosamplesummary="Homo sapiens GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11" and target="ZBTB11"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN286GUS|/analyses/ENCAN286GUS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044JTQ|/files/ENCFF044JTQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044JTQ|/files/ENCFF044JTQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF897HIU|/files/ENCFF897HIU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF897HIU|/files/ENCFF897HIU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.46. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR057DTZ | float |
TF_ChIP-seq_ENCSR057DTZ |
TF_ChIP-seq ENCSR057DTZ [biosample_summary="Homo sapiens GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11" and target="ZBTB11"]
|
 |
[15.6, 1.14e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF083GTV.bed.gz | 52.37 KB | 169be69044b9490756d4da450e52a8d0 |
| ENCFF083GTV.bed.gz.dvc | 99.0 B | fbed6e758a07e9dd054fd307e10174f7 |
| ENCFF083GTV.tabix.bed.gz | 34.02 KB | e38bc65d92adf852fd4f21063018ca5c |
| ENCFF083GTV.tabix.bed.gz.dvc | 105.0 B | 9f2dbcc3a388ef6fae4cd554e38443c1 |
| ENCFF083GTV.tabix.bed.gz.tbi | 29.24 KB | 3d9cd0bbef5258fc342b433ae7b3b452 |
| ENCFF083GTV.tabix.bed.gz.tbi.dvc | 109.0 B | 1a883a22e28798984db83a209670914e |
| genomic_resource.yaml | 4.36 KB | bbf11c97ab49fe2dcbd4621d7627517f |
| genomic_resource_original.yaml | 4.19 KB | 72c903f42d1c88b3a571e4b220296568 |
| statistics/ |