TF_ChIP-seq_ENCSR056VYW
TF_ChIP-seq ENCSR056VYW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF174" and target="ZNF174"]
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| Id: | TF_ChIP-seq/ENCSR056VYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR056VYW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF174" and target="ZNF174"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF174 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN503UCL|/analyses/ENCAN503UCL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN503UCL|/analyses/ENCAN503UCL/} has in progress subobject document {27a60718-9188-4c25-8918-a0a791142a02|/documents/27a60718-9188-4c25-8918-a0a791142a02/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF294GEF|/files/ENCFF294GEF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF294GEF|/files/ENCFF294GEF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.81. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF928ZCZ|/files/ENCFF928ZCZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF928ZCZ|/files/ENCFF928ZCZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR056VYW | float |
TF_ChIP-seq_ENCSR056VYW |
TF_ChIP-seq ENCSR056VYW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF174" and target="ZNF174"]
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[13.8, 410] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF822FXR.bed.gz | 20.9 KB | b871a819e7c7c148ebea2615431ab461 |
| ENCFF822FXR.bed.gz.dvc | 99.0 B | 98fdad16d1c24ad33b43badd00b8e59d |
| ENCFF822FXR.tabix.bed.gz | 13.23 KB | 691db3d07758f4f3b80dd5e5a6dc5da2 |
| ENCFF822FXR.tabix.bed.gz.dvc | 105.0 B | ca3227c4ee3b788b5b5db6fb229663d2 |
| ENCFF822FXR.tabix.bed.gz.tbi | 14.26 KB | c36034998d1fea9a15d7252f259f1b12 |
| ENCFF822FXR.tabix.bed.gz.tbi.dvc | 109.0 B | 810fb5d7e7689bea4efe78395e492fc9 |
| genomic_resource.yaml | 4.45 KB | 04f7cfdbd50f8df327cf6f02a2aaae3c |
| genomic_resource_original.yaml | 4.28 KB | fb042b2202da9adbde861add311c4533 |
| statistics/ |