TF_ChIP-seq_ENCSR056VMR
TF_ChIP-seq ENCSR056VMR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
×
| Id: | TF_ChIP-seq/ENCSR056VMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR056VMR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN492MZO|/analyses/ENCAN492MZO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN492MZO|/analyses/ENCAN492MZO/} has in progress subobject document {14187a38-b0db-4314-871a-5d52aa258fd4|/documents/14187a38-b0db-4314-871a-5d52aa258fd4/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF549RIK|/files/ENCFF549RIK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF549RIK|/files/ENCFF549RIK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF987CYJ|/files/ENCFF987CYJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF987CYJ|/files/ENCFF987CYJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.33. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR056VMR | float |
TF_ChIP-seq_ENCSR056VMR |
TF_ChIP-seq ENCSR056VMR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
|
|
[10.9, 501] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF567CPM.bed.gz | 28.24 KB | f6c36db8a98e3a642133b515e38ae6e5 |
| ENCFF567CPM.bed.gz.dvc | 99.0 B | 12aba44a53bb9b847d677d122d1d799d |
| ENCFF567CPM.tabix.bed.gz | 18.82 KB | 0b50e15eac58d0787322a01a4bd33d00 |
| ENCFF567CPM.tabix.bed.gz.dvc | 105.0 B | ee595b1839dbe8bf3549b7cb9b1435da |
| ENCFF567CPM.tabix.bed.gz.tbi | 17.75 KB | e8310435023c1c50e29904c659adb7af |
| ENCFF567CPM.tabix.bed.gz.tbi.dvc | 109.0 B | 5db80c4b9ef322950da4216196e780a5 |
| genomic_resource.yaml | 4.44 KB | e43ea9b34ad1b3268bdacd938cc60df0 |
| genomic_resource_original.yaml | 4.28 KB | 6de735d8bf454938791adae8f8394246 |
| statistics/ |