TF_ChIP-seq_ENCSR055ZIA
TF_ChIP-seq ENCSR055ZIA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570" and target="ZNF570"]
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| Id: | TF_ChIP-seq/ENCSR055ZIA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR055ZIA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570" and target="ZNF570"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN890CMS|/analyses/ENCAN890CMS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN890CMS|/analyses/ENCAN890CMS/} has in progress subobject document {40a5955c-07d4-4535-8480-b98e2eb5b4cc|/documents/40a5955c-07d4-4535-8480-b98e2eb5b4cc/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF698QXC|/files/ENCFF698QXC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF698QXC|/files/ENCFF698QXC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF214PKV|/files/ENCFF214PKV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF214PKV|/files/ENCFF214PKV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.48. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF259PTV|/files/ENCFF259PTV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 3.67. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF726HHS|/files/ENCFF726HHS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 3.67. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR055ZIA | float |
TF_ChIP-seq_ENCSR055ZIA |
TF_ChIP-seq ENCSR055ZIA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570" and target="ZNF570"]
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[7.57, 344] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF259PTV.bed.gz | 61.42 KB | 16d725ea708402a51e0b962f1bf564e4 |
| ENCFF259PTV.bed.gz.dvc | 99.0 B | 7af38e5ef50b5dd8ba2b5fa6a766f6d3 |
| ENCFF259PTV.tabix.bed.gz | 44.83 KB | 20b808231264117270da4dd6c3f7ac27 |
| ENCFF259PTV.tabix.bed.gz.dvc | 105.0 B | 99503c527739f0518e61d68e87b1f084 |
| ENCFF259PTV.tabix.bed.gz.tbi | 28.28 KB | 0164193c28087d99da2a941ba8dbe0df |
| ENCFF259PTV.tabix.bed.gz.tbi.dvc | 109.0 B | 2090ebb629b1abe3c12c5e2cad7c3f12 |
| genomic_resource.yaml | 5.49 KB | 4a1709bc40e2f6ec4233eb482f9aae57 |
| genomic_resource_original.yaml | 5.33 KB | 68a6ee241c59789e44b847c20b96ee73 |
| statistics/ |