TF_ChIP-seq_ENCSR055WBT
TF_ChIP-seq ENCSR055WBT [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR055WBT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR055WBT [biosamplesummary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN484MWY|/analyses/ENCAN484MWY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN484MWY|/analyses/ENCAN484MWY/} has in progress subobject document {3ed1c76d-f9ab-43ee-b458-5b32f4989f43|/documents/3ed1c76d-f9ab-43ee-b458-5b32f4989f43/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF348BZS|/files/ENCFF348BZS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF348BZS|/files/ENCFF348BZS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR055WBT | float |
TF_ChIP-seq_ENCSR055WBT |
TF_ChIP-seq ENCSR055WBT [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="POLR2A"]
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[12.5, 1.22e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF618BDP.bed.gz | 624.4 KB | 2279b9ae3af25e6b41b03c92cb5a60f2 |
| ENCFF618BDP.bed.gz.dvc | 100.0 B | 00befdea36f8ba8f064c430106fa39c1 |
| ENCFF618BDP.tabix.bed.gz | 413.74 KB | de60eba4e54326a1f3ebdd214798418e |
| ENCFF618BDP.tabix.bed.gz.dvc | 106.0 B | 78426988bc439938cdc0d36b18aacf8d |
| ENCFF618BDP.tabix.bed.gz.tbi | 156.37 KB | dde9859d3ffb653eea6193dd0930e65a |
| ENCFF618BDP.tabix.bed.gz.tbi.dvc | 110.0 B | fe04fd8f9ff11d3fad48cb012805a083 |
| genomic_resource.yaml | 2.96 KB | 06f803da742c9b541d1e2b0488a2caa9 |
| genomic_resource_original.yaml | 2.83 KB | 7b2722a720fffb0f291408ade2dbf746 |
| statistics/ |