TF_ChIP-seq_ENCSR055FQB
TF_ChIP-seq ENCSR055FQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"]
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| Id: | TF_ChIP-seq/ENCSR055FQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR055FQB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN729WUY|/analyses/ENCAN729WUY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN729WUY|/analyses/ENCAN729WUY/} has in progress subobject document {6b1eb8ab-f62e-4713-912e-c781fd0dd924|/documents/6b1eb8ab-f62e-4713-912e-c781fd0dd924/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF226ZBA|/files/ENCFF226ZBA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF226ZBA|/files/ENCFF226ZBA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.45. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF688FLU|/files/ENCFF688FLU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF688FLU|/files/ENCFF688FLU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.40. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF130OKL|/files/ENCFF130OKL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF455XGO|/files/ENCFF455XGO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR055FQB | float |
TF_ChIP-seq_ENCSR055FQB |
TF_ChIP-seq ENCSR055FQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"]
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[8.65, 361] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF130OKL.bed.gz | 510.65 KB | aafbe6cb1e4e73850c0beeed0fa30a76 |
| ENCFF130OKL.bed.gz.dvc | 100.0 B | c762a9b691c5afb75598900639dd3f4a |
| ENCFF130OKL.tabix.bed.gz | 418.62 KB | d85db9e4cd915da73bd2c3a56149645e |
| ENCFF130OKL.tabix.bed.gz.dvc | 106.0 B | 94cc6d66eb28f3cefcc5efe0a931d5b7 |
| ENCFF130OKL.tabix.bed.gz.tbi | 164.05 KB | b52de33a257b814ea10d88549459f0ac |
| ENCFF130OKL.tabix.bed.gz.tbi.dvc | 110.0 B | 6c81c8ba0ff6665a7b31ba3bc9fe6198 |
| genomic_resource.yaml | 5.49 KB | 0a03ff989deec4941ef6e03dd0f37641 |
| genomic_resource_original.yaml | 5.33 KB | a407bbcdb29ce2e275112861213d2224 |
| statistics/ |