TF_ChIP-seq_ENCSR054JMQ
TF_ChIP-seq ENCSR054JMQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST" and target="REST"]
×
| Id: | TF_ChIP-seq/ENCSR054JMQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR054JMQ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens REST output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN577IQG|/analyses/ENCAN577IQG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN577IQG|/analyses/ENCAN577IQG/} has in progress subobject document {643ef2c1-0eb7-47eb-be72-df4e4d3c7de0|/documents/643ef2c1-0eb7-47eb-be72-df4e4d3c7de0/} audit_warning: Processed alignments file {ENCFF836KET|/files/ENCFF836KET/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17825240 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF836KET|/files/ENCFF836KET/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF836KET|/files/ENCFF836KET/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.10. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF505TWV|/files/ENCFF505TWV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF505TWV|/files/ENCFF505TWV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.50. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR054JMQ | float |
TF_ChIP-seq_ENCSR054JMQ |
TF_ChIP-seq ENCSR054JMQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST" and target="REST"]
|
|
[12.3, 8.49e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118ECK.bed.gz | 186.34 KB | 20b6edf4fc2dc85c41234e1fac95a6d2 |
| ENCFF118ECK.bed.gz.dvc | 100.0 B | 4dd421ca79e5af171f847be9e5e5fd97 |
| ENCFF118ECK.tabix.bed.gz | 136.93 KB | e547a2d432cee30a8b5e93feb0299331 |
| ENCFF118ECK.tabix.bed.gz.dvc | 106.0 B | 37d124cc0f95a0956722214235b3542c |
| ENCFF118ECK.tabix.bed.gz.tbi | 72.62 KB | 244c8b2cb3f68077033179e180c502a6 |
| ENCFF118ECK.tabix.bed.gz.tbi.dvc | 109.0 B | 922461c6ff17d44b20f3cfbf3b730096 |
| genomic_resource.yaml | 4.92 KB | 69fbdac6ef18ddedab04f4f8907cc19b |
| genomic_resource_original.yaml | 4.75 KB | cf3558c5f0cf8d98120ce219e04bff8d |
| statistics/ |