TF_ChIP-seq_ENCSR052FXA
TF_ChIP-seq ENCSR052FXA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B" and target="ZNF33B"]
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| Id: | TF_ChIP-seq/ENCSR052FXA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR052FXA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B" and target="ZNF33B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN004OWO|/analyses/ENCAN004OWO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN004OWO|/analyses/ENCAN004OWO/} has in progress subobject document {2089212f-a93c-4eb1-bacb-f8180109e3ec|/documents/2089212f-a93c-4eb1-bacb-f8180109e3ec/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF523EBZ|/files/ENCFF523EBZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF523EBZ|/files/ENCFF523EBZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.05. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF538HPB|/files/ENCFF538HPB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF538HPB|/files/ENCFF538HPB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR052FXA | float |
TF_ChIP-seq_ENCSR052FXA |
TF_ChIP-seq ENCSR052FXA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B" and target="ZNF33B"]
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[10.9, 428] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF135VAJ.bed.gz | 200.47 KB | 0c91bec62a0ecc7a484b97a7645e7b80 |
| ENCFF135VAJ.bed.gz.dvc | 100.0 B | e605317b449bc643f03a3180a5333295 |
| ENCFF135VAJ.tabix.bed.gz | 148.18 KB | 5303260d5a8a756e9c8a8c955715e76e |
| ENCFF135VAJ.tabix.bed.gz.dvc | 106.0 B | b739099af253411da12e075745c9d8e6 |
| ENCFF135VAJ.tabix.bed.gz.tbi | 71.64 KB | b7defc0a60bbb50d05a6a67311307567 |
| ENCFF135VAJ.tabix.bed.gz.tbi.dvc | 109.0 B | a52b54751d3c672f6cd2bce4e7e6c024 |
| genomic_resource.yaml | 4.45 KB | f82fdc4fac6e6167f79ad6f91471d547 |
| genomic_resource_original.yaml | 4.29 KB | ad8b959d6e4e1e34afce52615263c12d |
| statistics/ |