TF_ChIP-seq_ENCSR051OUX
TF_ChIP-seq ENCSR051OUX [biosample_summary="Homo sapiens K562" and target="NFATC3"]
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| Id: | TF_ChIP-seq/ENCSR051OUX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR051OUX [biosamplesummary="Homo sapiens K562" and target="NFATC3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN711DEY|/analyses/ENCAN711DEY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF430JFH|/files/ENCFF430JFH/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF059NNP|/files/ENCFF059NNP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF059NNP|/files/ENCFF059NNP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR051OUX | float |
TF_ChIP-seq_ENCSR051OUX |
TF_ChIP-seq ENCSR051OUX [biosample_summary="Homo sapiens K562" and target="NFATC3"]
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[11.3, 1.12e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF430JFH.bed.gz | 238.83 KB | 8ae11d1153b850cad6bdd12c86ca6134 |
| ENCFF430JFH.bed.gz.dvc | 100.0 B | 335929326d193b87128aab374f407c79 |
| ENCFF430JFH.tabix.bed.gz | 174.53 KB | 76e612210f71ba759c4cf670e277465d |
| ENCFF430JFH.tabix.bed.gz.dvc | 106.0 B | a530a3e14fada29e80275c75ac2a5483 |
| ENCFF430JFH.tabix.bed.gz.tbi | 91.16 KB | f8da6bfa446f7836019ba5334c333b58 |
| ENCFF430JFH.tabix.bed.gz.tbi.dvc | 109.0 B | 063d054b876b0080a3c990354c15bc6e |
| genomic_resource.yaml | 3.38 KB | 7d3afe0aebf55b30e2293374b7d459a2 |
| genomic_resource_original.yaml | 3.28 KB | a538e3ce96af7b52aa76699d2f4ff33e |
| statistics/ |