| Id: | TF_ChIP-seq/ENCSR050KWL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR050KWL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22" and target="ZSCAN22"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN569QYB|/analyses/ENCAN569QYB/} has in progress subobject document {af2ff3ce-9fde-45b3-91da-cf8ae790f0a6|/documents/af2ff3ce-9fde-45b3-91da-cf8ae790f0a6/} audit_internal_action: Released analysis {ENCAN569QYB|/analyses/ENCAN569QYB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF356KLI|/files/ENCFF356KLI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF356KLI|/files/ENCFF356KLI/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.74. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF714PSE|/files/ENCFF714PSE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF714PSE|/files/ENCFF714PSE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR050KWL | float |
TF_ChIP-seq_ENCSR050KWL |
TF_ChIP-seq ENCSR050KWL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22" and target="ZSCAN22"]
|
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[8.41, 618] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF904LYG.bed.gz | 120.36 KB | c401a48c0293a32de23774e6afe2e0f8 |
| ENCFF904LYG.bed.gz.dvc | 100.0 B | 7a241a8ad4868ab398ccf5b6d2277e90 |
| ENCFF904LYG.tabix.bed.gz | 89.54 KB | c59fd857fee0cdca99e7cf0c1bf696e2 |
| ENCFF904LYG.tabix.bed.gz.dvc | 105.0 B | 67531dd8c3085afd71b0c3b590ab092f |
| ENCFF904LYG.tabix.bed.gz.tbi | 47.13 KB | 2896d4cda79798a93047f696daff0c4c |
| ENCFF904LYG.tabix.bed.gz.tbi.dvc | 109.0 B | c4b5f2f012fc0f2b797453ff8957de39 |
| genomic_resource.yaml | 4.46 KB | f6d34b5c9371b31444ec522b61b63f6f |
| genomic_resource_original.yaml | 4.29 KB | d9ae2ed96330487e55b610fe25f6e33b |
| statistics/ |