TF_ChIP-seq_ENCSR046DIG
TF_ChIP-seq ENCSR046DIG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"]
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| Id: | TF_ChIP-seq/ENCSR046DIG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR046DIG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN070EVN|/analyses/ENCAN070EVN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN070EVN|/analyses/ENCAN070EVN/} has in progress subobject document {e12a89dd-07f8-4ab9-b01a-97bf5c09fd23|/documents/e12a89dd-07f8-4ab9-b01a-97bf5c09fd23/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF098EPQ|/files/ENCFF098EPQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF098EPQ|/files/ENCFF098EPQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR046DIG | float |
TF_ChIP-seq_ENCSR046DIG |
TF_ChIP-seq ENCSR046DIG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"]
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[6.51, 376] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF659PQJ.bed.gz | 33.91 KB | 56e011722deef5537c576802103f8b3a |
| ENCFF659PQJ.bed.gz.dvc | 99.0 B | 92d41ad7c2ad99f6c5beba008f462313 |
| ENCFF659PQJ.tabix.bed.gz | 24.93 KB | 07d21a31bba445647b2592c9c9d813f7 |
| ENCFF659PQJ.tabix.bed.gz.dvc | 105.0 B | d4e99b2837a44dd7fd7acea207ed997f |
| ENCFF659PQJ.tabix.bed.gz.tbi | 20.45 KB | 44103e2488c97226dbce2dabed45445c |
| ENCFF659PQJ.tabix.bed.gz.tbi.dvc | 109.0 B | a0236a1541f33a4e66b624b36d1f2ffc |
| genomic_resource.yaml | 3.18 KB | 2ba4ffe6a5177a2179901cf65fd268dd |
| genomic_resource_original.yaml | 3.01 KB | 510631eac33ead46df81b07744efd8fb |
| statistics/ |