TF_ChIP-seq_ENCSR045YHA
TF_ChIP-seq ENCSR045YHA [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR045YHA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR045YHA [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN663TUY|/analyses/ENCAN663TUY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF551KTP|/files/ENCFF551KTP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 18026724 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF551KTP|/files/ENCFF551KTP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF551KTP|/files/ENCFF551KTP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR045YHA | float |
TF_ChIP-seq_ENCSR045YHA |
TF_ChIP-seq ENCSR045YHA [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="EZH2"]
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[5.54, 279] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF134QBM.bed.gz | 326.67 KB | b1a6012c65eee78e6f736ccff87daff7 |
| ENCFF134QBM.bed.gz.dvc | 100.0 B | ac9bef4c78c8d70e423ef517797e86ee |
| ENCFF134QBM.tabix.bed.gz | 180.83 KB | 381c24e9265bb4b8184845f1f076384d |
| ENCFF134QBM.tabix.bed.gz.dvc | 106.0 B | b70bd25833c4f8011b5f6417de5bdc12 |
| ENCFF134QBM.tabix.bed.gz.tbi | 44.82 KB | d352bb8fa929a6033524abe53282083d |
| ENCFF134QBM.tabix.bed.gz.tbi.dvc | 109.0 B | 22c69f770b972f82aa4b26a21f3da94f |
| genomic_resource.yaml | 3.23 KB | 062dfddcb486acd901ca864b1b37cb24 |
| genomic_resource_original.yaml | 3.11 KB | 222525d6dad30730adddcc83529a18a8 |
| statistics/ |